seqminer (6.0)

0 users

Efficiently Read Sequence Data (VCF Format, BCF Format and METAL Format) into R.

http://seqminer.genomic.codes
http://cran.r-project.org/web/packages/seqminer

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Maintainer: Xiaowei Zhan
Author(s): Xiaowei Zhan [aut, cre], Dajiang Liu [aut], Attractive Chaos [cph] (We have used the following software and made minimal necessary changes: Tabix, Heng Li <lh3@live.co.uk> (MIT license). We removed standard IO related functions, e.g. printf, fprintf ; also changed its un-safe pointer arithmetics.), Broad Institute / Massachusetts Institute of Technology [cph], Genome Research Ltd (GRL) [cph]

License: GPL | file LICENSE

Uses: testthat, SKAT
Reverse depends: STARSEQ
Reverse suggests: FREGAT, SKAT

Released 5 months ago.


27 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of seqminer yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for seqminer on google, google scholar, r-help, r-devel.

Visit seqminer on R Graphical Manual.