shazam (0.1.6)

Immunoglobulin Somatic Hypermutation Analysis.

http://shazam.readthedocs.io
http://cran.r-project.org/web/packages/shazam

Provides a computational framework for Bayesian estimation of antigen-driven selection in immunoglobulin (Ig) sequences, providing an intuitive means of analyzing selection by quantifying the degree of selective pressure. Also provides tools to profile mutations in Ig sequences, build models of somatic hypermutation (SHM) in Ig sequences, and make model-dependent distance comparisons of Ig repertoires.

Maintainer: Jason Vander Heiden
Author(s): Mohamed Uduman [aut], Gur Yaari [aut], Namita Gupta [aut], Jason Vander Heiden [aut, cre], Ang Cui [ctb], Susanna Marquez [ctb], Julian Zhou [ctb], Nima Nouri [ctb], Steven Kleinstein [aut, cph]

License: CC BY-SA 4.0

Uses: alakazam, ape, doParallel, dplyr, foreach, ggplot2, igraph, iterators, kedd, KernSmooth, lazyeval, scales, SDMTools, seqinr, stringi, tidyr, testthat, knitr, rmarkdown
Reverse depends: tigger

Released over 2 years ago.