stableGR (1.0)

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A Stable Gelman-Rubin Diagnostic for Markov Chain Monte Carlo.

http://cran.r-project.org/web/packages/stableGR

Practitioners of Bayesian statistics often use Markov chain Monte Carlo (MCMC) samplers to sample from a posterior distribution. This package determines whether the MCMC sample is large enough to yield reliable estimates of the target distribution. In particular, this calculates a Gelman-Rubin convergence diagnostic using stable and consistent estimators of Monte Carlo variance. Additionally, this uses the connection between an MCMC sample's effective sample size and the Gelman-Rubin diagnostic to produce a threshold for terminating MCMC simulation. Finally, this informs the user whether enough samples have been collected and (if necessary) estimates the number of samples needed for a desired level of accuracy. The theory underlying these methods can be found in "Revisiting the Gelman-Rubin Diagnostic" by Vats and Knudson (2018) .

Maintainer: Christina Knudson
Author(s): Christina Knudson [aut, cre], Dootika Vats [aut]

License: GPL-3

Uses: mvtnorm

Released 3 months ago.


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