synRNASeqNet (1.0)

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Synthetic RNA-Seq Network Generation and Mutual Information Estimates.

It implements various estimators of mutual information, such as the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, the shrinkage estimator, and the Chao-Shen estimator. It also offers wrappers to the kNN and kernel density estimators. Furthermore, it provides various index of performance evaluation such as precision, recall, FPR, F-Score, ROC-PR Curves and so on. Lastly, it provides a brand new way of generating synthetic RNA-Seq Network with known dependence structure.

Maintainer: Luciano Garofano
Author(s): Luciano Garofano, Stefano Maria Pagnotta, Michele Ceccarelli

License: GPL (>= 3)

Uses: GenKern, igraph, KernSmooth, parmigene

Released over 4 years ago.



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