trio (1.2.9)

Detection of disease-associated SNP interactions in case-parent trio data.

http://cran.r-project.org/web/packages/trio

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regreesion, to impute missing genotypes in trios, or to simulate case-parent trios with disease risk dependent on SNP interaction.

Maintainer: Holger Schwender
Author(s): Holger Schwender, Qing Li

License: LGPL-2

Uses: haplo.stats, survival, LogicReg

Released almost 8 years ago.