vanddraabe (1.0.0)

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Identification and Statistical Analysis of Conserved Waters in Proteins.

http://www.exeResearch.com/vanddraabe.html
https://github.com/exeResearch/vanddraabe/
http://cran.r-project.org/web/packages/vanddraabe

Identify and analyze conserved waters within crystallographic protein structures and molecular dynamics simulation trajectories. Statistical parameters for each water cluster, informative graphs, and a PyMOL session file to visually explore the conserved waters and protein are returned. Hydrophilicity is the propensity of waters to congregate near specific protein atoms and is related to conserved waters. An informatics derived set of hydrophilicity values are provided based on a large, high-quality X-ray protein structure dataset.

Maintainer: Emilio Xavier Esposito
Author(s): Emilio Xavier Esposito [aut, cre]

License: MIT + file LICENSE

Uses: bio3d, cowplot, fastcluster, ggplot2, openxlsx, reshape2, scales, testthat, knitr, rmarkdown

Released 2 months ago.


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